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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42066923_42067414_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42066923 - 42067414
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTATATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTATAT
U12 Branch Point Sequence:
TCCTCTTGTATA
Flanking Amino Acid:
PVPPTAVPIETWRMLH*
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
64.1
0.35
1.2
61
45.5
Major PPT
75.8
0.58
1
69.5
39.9
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
48.7
-0.1
1.8
59.09
41.8

Associated Gene:

Gene:
RBMS3
Ensembl Gene ID:
ENSAPLG00000012270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038656
41382680 - 42067514
684835