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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42066923_42069436_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42066923 - 42069436
Intron Length:
2514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGACTCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTCATTTGACT
Flanking Amino Acid:
PVPPTAVPIEGVVADTSPQT
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.9
0.49
0.8
66.6
35.3
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
62
0.46
1.5
77.51
39

Associated Gene:

Gene:
RBMS3
Ensembl Gene ID:
ENSAPLG00000012270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035175
41638541 - 42074119
435579
ENSAPLT00000035141
41382348 - 42074119
691772
ENSAPLT00000024427
41382680 - 42074119
691440
ENSAPLT00000012776
41483807 - 42073415
589609