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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42069565_42073408_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42069565 - 42073408
Intron Length:
3844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTAATTCAATT
Flanking Amino Acid:
HAPAYSYQQSKQ*
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
86.2
0.82
0.8
80.4
36.6
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
56.6
0.28
1.7
78.05
38.3

Associated Gene:

Gene:
RBMS3
Ensembl Gene ID:
ENSAPLG00000012270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035141
41382348 - 42074119
691772
ENSAPLT00000024427
41382680 - 42074119
691440
ENSAPLT00000012776
41483807 - 42073415
589609
ENSAPLT00000035175
41638541 - 42074119
435579