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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4211789_4211950_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4211789 - 4211950
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAATC
5'SS Class:
major
3'SS Sequence:
TTCAATGCAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATG
Flanking Amino Acid:
SFSISFLGFHGPYCNATTDQ
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
71.6
38.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
52.7
0.06
1.2
53
40.4
Minor 5ss
36.8
-1.5
3.3
48.8
41.7
Minor BPS
64.5
0.32
1.5
70.72
37.1

Associated Gene:

Gene:
CRHR2
Ensembl Gene ID:
ENSAPLG00000011160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011655
4211077 - 4323068
111992