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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42193595_42195638_R

Intron Information:

Intron Rank:
131043
Intron Class:
major
Intron Phase:
Intron Coordinates:
42193595 - 42195638
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGATGA
5'SS Class:
major
3'SS Sequence:
TTTATTTATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
68.7
39.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.3
0.82
0.8
85.5
34
Minor 5ss
38.7
-1.3
3
46.6
42.4
Minor BPS
61.2
0.33
1.7
74.93
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017712
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042274
42193541 - 42196811
3271