About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42280104_42287274_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42280104 - 42287274
Intron Length:
7171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCTGGTTATTT
Flanking Amino Acid:
LGSSLPAALRGKEAEAAIQD
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
69.7
41.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.7
0.69
0.9
77.7
40.6
Minor 5ss
35
-1.7
2.8
37.9
39.5
Minor BPS
45.7
-0.2
2.5
70.91
46.7

Associated Gene:

Gene:
TGFBR2
Ensembl Gene ID:
ENSAPLG00000012100
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025526
42279829 - 42337083
57255