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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42287308_42306114_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42287308 - 42306114
Intron Length:
18807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTCTCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
TCATTATTAAGT
Flanking Amino Acid:
KEAEAAIQDSSETMSPIDRN
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
76.5
38.6
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
88
0.85
0.6
85.7
21.4
Minor 5ss
42.7
-0.8
3.1
65.3
39.9
Minor BPS
55.5
0.25
1.9
73.32
43.5

Associated Gene:

Gene:
TGFBR2
Ensembl Gene ID:
ENSAPLG00000012100
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025526
42279829 - 42337083
57255