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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42308112_42318830_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42308112 - 42318830
Intron Length:
10719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTCATTTAATG
Flanking Amino Acid:
ECNDVLIFSTDDPHKPEEKD
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.1
30.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.9
0.85
0.7
82.7
25.9
Minor 5ss
42.4
-0.8
3.1
57.6
47.1
Minor BPS
58
0.11
1.6
61.41
41

Associated Gene:

Gene:
TGFBR2
Ensembl Gene ID:
ENSAPLG00000012100
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012612
42279829 - 42337083
57255
ENSAPLT00000025526
42279829 - 42337083
57255