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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42350643_42352978_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42350643 - 42352978
Intron Length:
2336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCGA
5'SS Class:
major
3'SS Sequence:
TCAATGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTTAAAT
Flanking Amino Acid:
FFRQVVISPQKVCLKPTCGL
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.8
39.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.5
0.57
1
68.9
41.6
Minor 5ss
29.9
-2.3
2.8
32.4
35.9
Minor BPS
73.3
0.81
1.3
84.29
36.6

Associated Gene:

Gene:
GADL1
Ensembl Gene ID:
ENSAPLG00000011272
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023468
42350384 - 42437709
87326