About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42353090_42391879_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42353090 - 42391879
Intron Length:
38790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
GTGACAATAAGC
Flanking Amino Acid:
GPEFWQKLHEVAPIIKERMM
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
83.5
0.75
0.8
80.5
31.5
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
43.4
-0.5
2.1
54.36
42.8

Associated Gene:

Gene:
GADL1
Ensembl Gene ID:
ENSAPLG00000011272
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034760
42351110 - 42437709
86600
ENSAPLT00000023468
42350384 - 42437709
87326
ENSAPLT00000011770
42342967 - 42437709
94743
ENSAPLT00000041233
42351110 - 42478451
127342