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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42399106_42405943_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42399106 - 42405943
Intron Length:
6838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
GTGTTTCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAG
U12 Branch Point Sequence:
TGTTTCTGATAG
Flanking Amino Acid:
CCALLVKDNSGLLKKCYSAK
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
68.7
42
Major BPS
61.8
0.29
1.5
69.7
35.5
Major PPT
68.8
0.42
1
65.5
41.2
Minor 5ss
39.8
-1.1
3.1
61.7
42.2
Minor BPS
48.3
-0.2
1.9
58.2
43

Associated Gene:

Gene:
GADL1
Ensembl Gene ID:
ENSAPLG00000011272
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011770
42342967 - 42437709
94743
ENSAPLT00000041233
42351110 - 42478451
127342
ENSAPLT00000035499
42374966 - 42437709
62744
ENSAPLT00000034760
42351110 - 42437709
86600
ENSAPLT00000023468
42350384 - 42437709
87326
ENSAPLT00000047041
42351110 - 42437709
86600