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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42406026_42406272_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42406026 - 42406272
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ATGAATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTTTATGAATT
Flanking Amino Acid:
KHCRLLHGIHRADSVAWNPH
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
73.3
0.53
1
66.1
44.3
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
58.1
0.33
1.7
77.48
39.2

Associated Gene:

Gene:
GADL1
Ensembl Gene ID:
ENSAPLG00000011272
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035499
42374966 - 42437709
62744
ENSAPLT00000034760
42351110 - 42437709
86600
ENSAPLT00000023468
42350384 - 42437709
87326
ENSAPLT00000047041
42351110 - 42437709
86600
ENSAPLT00000011770
42342967 - 42437709
94743
ENSAPLT00000041233
42351110 - 42478451
127342