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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42415225_42415337_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42415225 - 42415337
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTGAATGTAACT
Flanking Amino Acid:
ENVYFIKTDERGKMIPEELE
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
68.6
0.42
0.9
66.2
35.9
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
48.9
-0
2.2
73.34
43.6

Associated Gene:

Gene:
GADL1
Ensembl Gene ID:
ENSAPLG00000011272
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011770
42342967 - 42437709
94743
ENSAPLT00000041233
42351110 - 42478451
127342
ENSAPLT00000035499
42374966 - 42437709
62744
ENSAPLT00000034760
42351110 - 42437709
86600
ENSAPLT00000023468
42350384 - 42437709
87326
ENSAPLT00000047041
42351110 - 42437709
86600