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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42422824_42423520_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42422824 - 42423520
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TATTTTTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATGCTTTTATT
Flanking Amino Acid:
RFITEALNPSVYTYEVSPVF
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.4
36.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.5
0.8
0.9
84.8
35.4
Minor 5ss
38.3
-1.3
3.3
49.9
46.4
Minor BPS
59.4
0.38
1.7
76.34
41.1

Associated Gene:

Gene:
GADL1
Ensembl Gene ID:
ENSAPLG00000011272
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034760
42351110 - 42437709
86600
ENSAPLT00000023468
42350384 - 42437709
87326
ENSAPLT00000047041
42351110 - 42437709
86600
ENSAPLT00000011770
42342967 - 42437709
94743
ENSAPLT00000041233
42351110 - 42478451
127342
ENSAPLT00000035499
42374966 - 42437709
62744