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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42423612_42425315_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42423612 - 42425315
Intron Length:
1704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAGGAATG
5'SS Class:
major
3'SS Sequence:
TCTGTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATCTGTATTT
Flanking Amino Acid:
QDVIQYSVKTSHPRFFNQLY
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.1
60.5
44.3
Major BPS
100
1.24
0.5
100
0
Major PPT
84
0.76
0.8
81.1
35.5
Minor 5ss
37.9
-1.4
3.4
54.2
43.8
Minor BPS
47.6
-0.1
2.2
67.81
44

Associated Gene:

Gene:
GADL1
Ensembl Gene ID:
ENSAPLG00000011272
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023468
42350384 - 42437709
87326
ENSAPLT00000047041
42351110 - 42437709
86600
ENSAPLT00000011770
42342967 - 42437709
94743
ENSAPLT00000041233
42351110 - 42478451
127342
ENSAPLT00000035499
42374966 - 42437709
62744
ENSAPLT00000034760
42351110 - 42437709
86600