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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42425758_42437702_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42425758 - 42437702
Intron Length:
11945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAACGCC
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TTTGTCTTACAG
Flanking Amino Acid:
MEVGICKQDMLQ
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
58.4
42
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
89.8
0.9
0.7
84.2
30.9
Minor 5ss
36.5
-1.5
3.4
42.4
44.7
Minor BPS
52.6
-0
1.9
63.72
44.3

Associated Gene:

Gene:
GADL1
Ensembl Gene ID:
ENSAPLG00000011272
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034760
42351110 - 42437709
86600
ENSAPLT00000023468
42350384 - 42437709
87326
ENSAPLT00000011770
42342967 - 42437709
94743
ENSAPLT00000047041
42351110 - 42437709
86600
ENSAPLT00000035499
42374966 - 42437709
62744