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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4248671_4255335_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4248671 - 4255335
Intron Length:
6665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTATT
5'SS Class:
major
3'SS Sequence:
TCTTTACCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATCTCTTTACCT
Flanking Amino Acid:
SQCEPILDDKRKYALHYKIA
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.3
83.5
35.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.1
0.74
0.8
74.5
35.4
Minor 5ss
43.2
-0.7
2.6
60.2
44.3
Minor BPS
68.6
0.66
1.6
81.74
40.3

Associated Gene:

Gene:
CRHR2
Ensembl Gene ID:
ENSAPLG00000011160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025127
4163283 - 4323068
159786
ENSAPLT00000022712
4163283 - 4323068
159786
ENSAPLT00000011655
4211077 - 4323068
111992