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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42488540_42491106_R

Intron Information:

Intron Rank:
132620
Intron Class:
major
Intron Phase:
Intron Coordinates:
42488540 - 42491106
Intron Length:
2567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CCCTCCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
32.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.7
0.67
0.7
72.1
32.5
Minor 5ss
28.5
-2.5
3.2
31.7
42.6
Minor BPS
49.7
0.06
1.8
63.83
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018597
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044580
42488371 - 42513345
24975