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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42602530_42626025_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42602530 - 42626025
Intron Length:
23496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCCGC
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CCTCCCCCAATT
Flanking Amino Acid:
FESIIHEFDPWFNYRSTHHL
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
55.8
43.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.4
0.84
0.6
81
31
Minor 5ss
32.9
-1.9
3
38.8
40.9
Minor BPS
48.3
-0
1.9
66.35
44.4

Associated Gene:

Gene:
STT3B
Ensembl Gene ID:
ENSAPLG00000010692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026940
42601778 - 42649337
47560
ENSAPLT00000023042
42601778 - 42653920
52143
ENSAPLT00000011208
42601778 - 42653202
51425