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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42636958_42638642_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42636958 - 42638642
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TAAACAAAAACT
Flanking Amino Acid:
IRTSEHMAAAGVFALLQAYA
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
80.4
0.69
0.9
77.2
37.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
44.6
-0.3
2.1
65.69
43.7

Associated Gene:

Gene:
STT3B
Ensembl Gene ID:
ENSAPLG00000010692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026940
42601778 - 42649337
47560
ENSAPLT00000023042
42601778 - 42653920
52143
ENSAPLT00000011208
42601778 - 42653202
51425