About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42640853_42642377_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42640853 - 42642377
Intron Length:
1525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAAAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
SGRFYSLWDTGYAKIHIPII
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.7
44.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.3
0.37
1.2
69.9
38.5
Minor 5ss
34.7
-1.7
2.6
34.3
41.4
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
STT3B
Ensembl Gene ID:
ENSAPLG00000010692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026940
42601778 - 42649337
47560
ENSAPLT00000023042
42601778 - 42653920
52143
ENSAPLT00000011208
42601778 - 42653202
51425