Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42645419_42645906_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42645419 - 42645906

Intron Length:

488

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

ATAAAATGAACT

Flanking Amino Acid:

SVVLASYNHDGTRNILDDFR

Intron Amino Acid Position:

659

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

38.4

Major BPS

79.2

0.73

75.3

39.4

Major PPT

0.77

0.8

75.9

Minor 5ss

29.2

-2.4

2.5

25.1

36.7

Minor BPS

47.5

-0.1

1.9

68.24

41.2

Associated Gene:

Gene:

STT3B

Ensembl Gene ID:

ENSAPLG00000010692

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026940

42601778 - 42649337

47560

ENSAPLT00000023042

42601778 - 42653920

52143

ENSAPLT00000011208

42601778 - 42653202

51425