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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42648067_42649111_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42648067 - 42649111
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATT
Flanking Amino Acid:
AEGEHPKDIRESDYFTPQGE
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.1
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.2
0.86
0.7
84.3
30.6
Minor 5ss
33.3
-1.9
3.2
36.6
41.7
Minor BPS
69.5
0.7
1.6
83.31
38.3

Associated Gene:

Gene:
STT3B
Ensembl Gene ID:
ENSAPLG00000010692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026940
42601778 - 42649337
47560
ENSAPLT00000023042
42601778 - 42653920
52143
ENSAPLT00000011208
42601778 - 42653202
51425