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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42652641_42653191_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42652641 - 42653191
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTTCTTTAAAT
Flanking Amino Acid:
YIKNKLILKKGWF*
Intron Amino Acid Position:
901

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.9
79.6
35.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75.7
0.58
0.9
69.4
36.2
Minor 5ss
20.4
-3.4
3.9
31.7
42.9
Minor BPS
79.4
1
1.2
90.2
33.2

Associated Gene:

Gene:
STT3B
Ensembl Gene ID:
ENSAPLG00000010692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011208
42601778 - 42653202
51425