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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42659332_42660125_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42659332 - 42660125
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTGTA
5'SS Class:
major
3'SS Sequence:
AATTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
CTCTCCCTAATT
Flanking Amino Acid:
PWKPKYFAKEGDGWLYLNPL
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
74.5
35.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
83.8
0.76
0.8
77.3
36.1
Minor 5ss
35.3
-1.7
3.5
49.6
46.6
Minor BPS
66.5
0.59
1.7
80.27
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043097
42657975 - 42667991
10017