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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42660280_42661957_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42660280 - 42661957
Intron Length:
1678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
CCCAATCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCCTTCCCAATC
Flanking Amino Acid:
PIAKQGPLESRHLWQYVTNS
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
60.3
0.23
0.9
52.9
35.4
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
47.8
-0.1
1.8
58.37
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043097
42657975 - 42667991
10017