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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42662141_42663238_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42662141 - 42663238
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTATAT
U12 Branch Point Sequence:
TTTTCTTTTCCT
Flanking Amino Acid:
TKPFYGGKVHRVTAEVKHNP
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
61.5
0.29
1.3
61
45.5
Major PPT
75.1
0.56
1
76.8
37.4
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043097
42657975 - 42667991
10017