Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4269468_4273467_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4269468 - 4273467

Intron Length:

4000

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TGGTTTTAAAAT

Flanking Amino Acid:

IDHNIHESNEPWCRCFTTVY

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

81.6

29.9

Major BPS

90.4

0.7

90.2

19.3

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

-1.5

3.3

50.9

39.6

Minor BPS

51.6

0.13

1.8

68.97

42.3

Associated Gene:

Gene:

CRHR2

Ensembl Gene ID:

ENSAPLG00000011160

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025127

4163283 - 4323068

159786

ENSAPLT00000022712

4163283 - 4323068

159786

ENSAPLT00000011655

4211077 - 4323068

111992