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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_427749_431381_R

Intron Information:

Intron Rank:
147025
Intron Class:
major
Intron Phase:
Intron Coordinates:
427749 - 431381
Intron Length:
3633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TGTCTATTGAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
48.6
-0
1.9
70.29
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026393
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030160
425654 - 431476
5823