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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4277501_4284973_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4277501 - 4284973
Intron Length:
7473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTCTCTCATTT
Flanking Amino Acid:
AIGKLYYENEQCWFGKEPGK
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
89.2
0.88
0.7
84.2
30.9
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
54.8
0.23
1.8
77.31
39.5

Associated Gene:

Gene:
CRHR2
Ensembl Gene ID:
ENSAPLG00000011160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025127
4163283 - 4323068
159786
ENSAPLT00000022712
4163283 - 4323068
159786
ENSAPLT00000011655
4211077 - 4323068
111992