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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42788984_42793253_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42788984 - 42793253
Intron Length:
4270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATA
Flanking Amino Acid:
LKVCIVGSGNWGSAVAKIIG
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.3
0.88
0.6
85
22.7
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
77.2
0.85
1
79.7
29.8

Associated Gene:

Gene:
GPD1L
Ensembl Gene ID:
ENSAPLG00000010158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010592
42788931 - 42811468
22538