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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42793432_42794772_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
42793432 - 42794772
Intron Length:
1341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CATAAATACGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TCTCTCATAAAT
Flanking Amino Acid:
LPGYKLPDNVVAIPNLNEAV
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
65.7
40
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
54.9
0.11
1
48
39
Minor 5ss
31.2
-2.2
3.3
38.7
40.9
Minor BPS
56.2
0.27
1.7
75.49
40.7

Associated Gene:

Gene:
GPD1L
Ensembl Gene ID:
ENSAPLG00000010158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010592
42788931 - 42811468
22538