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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42794914_42798247_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42794914 - 42798247
Intron Length:
3334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATAA
5'SS Class:
major
3'SS Sequence:
ATGTTGGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ACTTTCGTAATT
Flanking Amino Acid:
KKALGITLIKGIDEGPEGLK
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69
31.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
69.7
0.44
1
62.4
43.7
Minor 5ss
42.7
-0.8
3
55.5
48.7
Minor BPS
59.6
0.38
2
77.24
40.1

Associated Gene:

Gene:
GPD1L
Ensembl Gene ID:
ENSAPLG00000010158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010592
42788931 - 42811468
22538