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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42799608_42807279_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42799608 - 42807279
Intron Length:
7672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAT
U12 Branch Point Sequence:
AGTCGCTCATTT
Flanking Amino Acid:
DTVELCGALKNIVAVGAGFC
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
67.4
0.43
1.2
69
38.9
Major PPT
75.4
0.57
0.9
76.7
32
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
43.5
-0.4
2.1
61.06
42.7

Associated Gene:

Gene:
GPD1L
Ensembl Gene ID:
ENSAPLG00000010158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010592
42788931 - 42811468
22538