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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42807514_42807947_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42807514 - 42807947
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTAC
5'SS Class:
major
3'SS Sequence:
ACCCTGTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
TCTCCCCCCACC
Flanking Amino Acid:
VAEAFVKTGKSIEELEQEML
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
69.5
38.2
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
68.9
0.43
0.9
65.6
35.5
Minor 5ss
45
-0.5
2.9
61.2
43.7
Minor BPS
45
-0.4
2.2
61.15
43.9

Associated Gene:

Gene:
GPD1L
Ensembl Gene ID:
ENSAPLG00000010158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010592
42788931 - 42811468
22538