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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42808055_42811371_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42808055 - 42811371
Intron Length:
3317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
CTTTCCCCACCC
Flanking Amino Acid:
RILKQKGMLEKFPLFTAVYQ
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
74.3
0.55
0.8
72.9
32
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
48.3
-0.1
2.2
67.47
44.1

Associated Gene:

Gene:
GPD1L
Ensembl Gene ID:
ENSAPLG00000010158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010592
42788931 - 42811468
22538