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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4285047_4299245_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4285047 - 4299245
Intron Length:
14199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
CAGGTCTTATTT
Flanking Amino Acid:
YQGPVILVLLINFVFLFNIV
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
80.5
33.7
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
87.5
0.84
0.7
79.8
32.2
Minor 5ss
36
-1.6
3.3
45.4
43.9
Minor BPS
48.5
-0
1.7
59.7
44.6

Associated Gene:

Gene:
CRHR2
Ensembl Gene ID:
ENSAPLG00000011160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025127
4163283 - 4323068
159786
ENSAPLT00000022712
4163283 - 4323068
159786
ENSAPLT00000011655
4211077 - 4323068
111992