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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42853413_42857455_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42853413 - 42857455
Intron Length:
4043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTTTTCAACA
Flanking Amino Acid:
RIPQVPWTTVGLCFNGSAFI
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
78.3
30.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.1
0.7
0.9
77.7
35.5
Minor 5ss
34.5
-1.8
2.8
38.6
41.7
Minor BPS
67
0.53
1.5
75.9
35.2

Associated Gene:

Gene:
CMTM8
Ensembl Gene ID:
ENSAPLG00000010095
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010512
42827905 - 42860305
32401