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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42857573_42860221_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42857573 - 42860221
Intron Length:
2649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTTCA
5'SS Class:
major
3'SS Sequence:
CCTCTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTCTAATA
Flanking Amino Acid:
HNYNSWAASSFFAFVVTSCY
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
33.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82
0.72
0.7
75.7
26.5
Minor 5ss
37.2
-1.4
2.8
47.2
42.3
Minor BPS
66.6
0.52
1.6
79.19
30.8

Associated Gene:

Gene:
CMTM8
Ensembl Gene ID:
ENSAPLG00000010095
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010512
42827905 - 42860305
32401