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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42878778_42881394_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42878778 - 42881394
Intron Length:
2617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTGTCTTTACAG
Flanking Amino Acid:
MLTCVSWPLAEFLHYLIGTI
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
73.1
43.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
85.8
0.81
0.8
79.7
32.4
Minor 5ss
38.3
-1.3
3
51.2
45.1
Minor BPS
56.9
0.08
1.8
64.08
44.1

Associated Gene:

Gene:
CMTM7
Ensembl Gene ID:
ENSAPLG00000010014
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010420
42863937 - 42882530
18594