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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42881494_42882431_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42881494 - 42882431
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TAGTGGTAAATA
Flanking Amino Acid:
YNVTGLVAGATFGFLATILC
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
90.9
0.92
0.6
84.7
30.2
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
42.2
-0.5
2.5
55.59
44.1

Associated Gene:

Gene:
CMTM7
Ensembl Gene ID:
ENSAPLG00000010014
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010420
42863937 - 42882530
18594