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Intron Name: Anas_platyrhynchos_platyrhynchos_2_42895250_42895898_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42895250 - 42895898

Intron Length:

649

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAAAGCTG

5'SS Class:

major

3'SS Sequence:

TTGTTTTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTGT

U12 Branch Point Sequence:

TGTTTTTTTAAG

Flanking Amino Acid:

QGTAEDSLLNKRQLCTLWLF

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.1

60.4

44.1

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

81.4

0.71

86.9

31.1

Minor 5ss

35.4

-1.7

3.5

47.2

42.8

Minor BPS

50.4

-0.1

1.8

60.53

41.2

Associated Gene:

Gene:

CMTM6

Ensembl Gene ID:

ENSAPLG00000026828

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041630

42894012 - 42902875

8864