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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42911008_42911990_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42911008 - 42911990
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTTAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTGCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATCC
Flanking Amino Acid:
QPPTAAGRPVDASPRVPGGS
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.7
0.65
0.8
76.7
31.9
Minor 5ss
33.9
-1.8
2.6
41.2
39
Minor BPS
55.7
0.16
1.8
71.92
39.1

Associated Gene:

Gene:
DYNC1LI1
Ensembl Gene ID:
ENSAPLG00000008868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009306
42908916 - 42931540
22625