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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42911008_42912155_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42911008 - 42912155
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATCC
Flanking Amino Acid:
DDQVFLMKQQDASPRVPGGS
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.1
82.3
32.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.7
0.65
0.8
76.7
31.9
Minor 5ss
51.2
0.04
2.5
70.2
40.4
Minor BPS
55.7
0.16
1.8
71.92
39.1

Associated Gene:

Gene:
DYNC1LI1
Ensembl Gene ID:
ENSAPLG00000008868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048107
42908916 - 42931540
22625