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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42915663_42916755_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42915663 - 42916755
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
CTTATCTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTATCTCAACA
Flanking Amino Acid:
GIPVVVVCTKCDAISVLEKE
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
76.1
34
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.8
0.56
0.9
70
35.2
Minor 5ss
47.2
-0.3
2.4
61.9
42.9
Minor BPS
62.5
0.39
1.6
71.99
40

Associated Gene:

Gene:
DYNC1LI1
Ensembl Gene ID:
ENSAPLG00000008868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048107
42908916 - 42931540
22625
ENSAPLT00000009306
42908916 - 42931540
22625