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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42919996_42921132_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42919996 - 42921132
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATAAAAT
Flanking Amino Acid:
YLNVHDEDRDDQTRCNVWIL
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.7
0.62
0.9
72.9
37.4
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
50.7
0.1
2
72.89
43.5

Associated Gene:

Gene:
DYNC1LI1
Ensembl Gene ID:
ENSAPLG00000008868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048107
42908916 - 42931540
22625
ENSAPLT00000009306
42908916 - 42931540
22625