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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42931212_42931379_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42931212 - 42931379
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
TGCCCCGCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
TGCCCCGCACCA
Flanking Amino Acid:
GGDEDDGQNLWSCILSEVST
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
51.4
45.5
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
60
0.23
1
51.2
38
Minor 5ss
34.3
-1.8
3.6
43.6
46
Minor BPS
41.3
-0.6
2.3
53.68
44.5

Associated Gene:

Gene:
DYNC1LI1
Ensembl Gene ID:
ENSAPLG00000008868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048107
42908916 - 42931540
22625
ENSAPLT00000009306
42908916 - 42931540
22625