About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42939105_42940273_F

Intron Information:

Intron Rank:
126921
Intron Class:
major
Intron Phase:
Intron Coordinates:
42939105 - 42940273
Intron Length:
1169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.6
Major BPS
100
1.24
0.5
100
0
Major PPT
77.7
0.62
0.9
70.5
39.7
Minor 5ss
35.3
-1.7
3.1
46.5
42.9
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047073
42938535 - 42940613
2079