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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42941985_42943725_F

Intron Information:

Intron Rank:
132310
Intron Class:
major
Intron Phase:
Intron Coordinates:
42941985 - 42943725
Intron Length:
1741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTACTCATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTCTACTCATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
73.9
32
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
71.4
0.48
0.9
62.9
38.1
Minor 5ss
25.5
-2.8
3.1
30.9
43.1
Minor BPS
48.4
-0.1
2
63.44
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021080
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032249
42941797 - 42949950
8154