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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42943750_42949873_F

Intron Information:

Intron Rank:
132311
Intron Class:
major
Intron Phase:
Intron Coordinates:
42943750 - 42949873
Intron Length:
6124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTACTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
32.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.6
0.64
0.8
73
36.5
Minor 5ss
28.5
-2.5
3.2
31.7
42.6
Minor BPS
59.8
0.39
1.9
81.16
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021080
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032249
42941797 - 42949950
8154